Make Fragments

Owned by Sam DeLuca
Last updated: Nov 08, 2023 by Aaron Aguhob
1 min read

The make fragments API generates Rosetta fragment libraries based on an input sequence.

Quickstart

cyrus engine submit make-fragments --sequence SECVENGGFCPDPEKMGDWCCGRCIRNECRNG

Inputs

  • --sequence (str)

    • Input sequence to generate fragment libraries for

Outputs

  • 3mers.tgz

    • library of 3mer fragments

  • 9mers.tgz

    • library of 9mer fragments

  • pssm.tgz

    • PSSM produced during fragment generation

  • sequence-profile.tgz

    • BLAST .chk checkpoint file produced during fragment generation