The make fragments API generates rosetta fragments Rosetta fragment libraries based on an input sequence. API jobs are submitted like this:

Quickstart

cyrus engine submit make-fragments --sequence SECVENGGFCPDPEKMGDWCCGRCIRNECRNG

The job returns the following outputs

...

Inputs

• --sequence (str)

  • Input sequence to generate fragment libraries for

Outputs

• 3mers.tgz

  • library of 3mer fragments

• 9mers.tgzA

  • library of 9mer fragments

• pssm.tgzThe

  • PSSM produced during fragment generation

• sequence-profile.tgzthe

  • BLAST .chk checkpoint file produced during fragment generation