Content Comparison

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Generate only sequence alignments for input.fasta:

cyrus engine submit blast input.fasta --mode nopssm 

Generate sequence alignments and PSSM for input.fasta:

cyrus engine submit blast input.fasta --mode pssm

Generate sequence alignments and patent information for input.fasta:

cyrus engine submit blast input.fasta --mode patent

Generate sequence alignments and return up to 1000 hits for input.fasta:

cyrus engine submit blast input.fasta --mode nopssm --max-target-sequences 1000

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