Page Comparison

The AI Folding API provides a common interface to AI based protein structure prediction tools. The API currently supports OpenFold, AlphaFold, and ESMFold. The API runs a post-processing protocol on the results to minimize the output structure into the Rosetta energy function and correct any atomic level errors in sidechain positioning (See Notes for more detail).

...

• --ai-tool

  • AI folding tool to run (openfold, alphafold, esmfold)

  • default = alphafold

• --mode

  • Mode to run with AI tool (monomer, multimer, singleseq)

  • default = monomer

• --model-sets

  • The set of model weights to use with OpenFold (alphafold, openfold) (See Notes for more detail)

  • default = openfold

• --existing-model-data

  • Location of existing model data in GCS

  • default = null

• --precomputed-alignments

  • Directory path to precomputed alignments that will be upload and used for AlphaFold jobs

  • default = null

• --run-relax

  • Enable or disable the Rosetta relax phase of post-processing

  • default = true

• --gpu-type

  • Select the GPU type to use (t4, a100) (See Notes for more detail)

  • default = t4

...