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• --heavy-chain, a protein sequence

  • Only canonical amino acids are supported.

  • Please include only the CH domain sequence.  Further heavy chain sequence will be ignored.

• --light-chain, a protein sequence

  • Only canonical amino acids are supported.

  • Please include only the CL domain sequence.  Further light chain sequence will be ignored.

• --model-full-antibody, boolean

  • Default is false, if this flag is set to true the entire antibody will be modeled. If false, only the variable domains will be modified

Output

• models (directory)

  • 5 PDB files representing the centers of the top-scoring clusters of models generated during the homology modeling process.  

Output File Interpretation

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