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To get cmndline help:
cyrus engine submit deimmunizer -h
Inputs
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Run deimmunizer on an input structure:
| Code Block |
|---|
cyrus engine submit deimmunizer --pdb-file input.pdb --res-file resfile.res --min-weight 0.1 --max-weight 1.0 |
Run deimmunizer on an input pdb using only the alleles in the specified file. Epitopes should be listed 1 per line:
| Code Block |
|---|
cyrus engine submit deimmunizer --pdb-file input.pdb --res-file resfile.res --min-weight 0.1 --max-weight 1.0 --allele-list-file alleles.list |
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