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cyrus submit input.fasta --mode=multimer --ai-tool=alphafold --is-prokaryote true

To model a eukarytotic multichain protein with alphafold

cyrus submit input.fasta --mode=multimer --ai-tool=alphafold --is-prokaryote false

API Outputs

The AI Folding API runs a post-processing protocol on the results of the AI tool. The purpose of the post-processing is to minimize the output structure into the rosetta energy function and correct any atomic detail level errors in sidechain positioning. The protocol consists of the following three steps

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