Page Comparison

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• Input PDB file – a PDB file

  • CLI argument: --pdb-file input.pdb

  • Do not include nonprotein residues. Does not currently support ligands / noncanonicals.

  • Do not include multimodel (NMR-sourced) PDBs.

• Resfile defining designable residues

  • CLI --res-file resfile

• Minimum epitope score weight

  • --min-weight

• Maximum epitope score weight

  • --max-weight

Command Line Examples

Run epitope scan deimmunizer on an input sequencestructure:

cyrus submit deimmunizer --pdb-file input.pdb --res-file resfile.res --min-weight 0.1 --max-weight 1.0

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