Page Comparison

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• pdb-file

  • must be a PDB which has been run through the ddg-relax endpoint

• Optional - mutations-file

  • TSV-formatted file containing mutations. To create an empty mutations file from an input PDB, run:
    cyrus prepare mutations <pdb-file> --output-dir <output-dir>

  • Each row can contain one or many mutations, in the format D or DMG

• Optional - all-mutations mode

  • you can omit an input mutations-file and instead run in all-mutations mode, where all mutations at each position will be selected

• Optional - dump-pdb mode

  • run with this flag to output the PDB for each mutation as well as the score

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