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pdb-file
must be a pdb which has been run through the ddg-relax endpoint
Optional - mutations-file
TSV-formatted file containing mutations. To create an empty mutations file from an input pdb, run:
cyrus prepare ddg- mutations <pdb-file> --output-dir <output-dir>
Optional - all-mutations mode
you can omit an input mutations-file and instead run in all-mutations mode, where all mutations at each position will be selected
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